PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_23731
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 345aa    MW: 38382.3 Da    PI: 6.767
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_23731genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.21.6e-09120141426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + C++f++ G Ck+Gd C FaHg
  PEQU_23731 120 VACPDFRK-GNCKRGDACEFAHG 141
                 68******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-6116142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.995117143IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-7120141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5122143IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.343151175IPR000571Zinc finger, CCCH-type
SMARTSM0035612151174IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MMMGDSGYRN PTVDVPPWSP FDDQFHLSAA GDYLLSEAGL AALQRYLPAN EVALEHDPDE  60
DAELTDPPID AYSCDEFRIY EFKVRRCARG RSHDWTECPY AHPGEKARRR DPRKFHYSGV  120
ACPDFRKGNC KRGDACEFAH GVFECWLHPA RYRTQPCKDG TACRRRVCFF AHTPEQLRYL  180
PHQKQQRMDS YDGSPMRLDG CFPKGLISSS PTSTLISPPL SPPVESPPVS PMGSSVNDVL  240
ASLRKLQISK VKSMPSSWGG LGASGVGFRS GFCSLPSTPT KAPAIVGRGW LDFDGFAEVE  300
EAVERVESGR ALRAKMYERL SKESGLERLD NSPAPDVGWV SELIM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925500.11e-149PREDICTED: zinc finger CCCH domain-containing protein 2-like
SwissprotO821991e-116C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A067KPP41e-139A0A067KPP4_JATCU; Uncharacterized protein
STRINGGLYMA08G03540.11e-138(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-111C3H family protein